COLD-PCR-HRM 检测结直肠癌患者外周血KRAS基因突变

李艳丽,赵冬梅,徐育红,张雁

肿瘤代谢与营养电子杂志 ›› 2017, Vol. 4 ›› Issue (1) : 51.

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肿瘤代谢与营养电子杂志 ›› 2017, Vol. 4 ›› Issue (1) : 51.
论著

COLD-PCR-HRM 检测结直肠癌患者外周血KRAS基因突变

  • 李艳丽,赵冬梅,徐育红,张雁
作者信息 +

Detecting KRAS gene mutations in peripheral blood of colorectal carcinoma with COLD-PCR-HRM

  • LI Yan-li, ZHAO Dong-mei, XU Yu-hong, ZHANG Yan
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摘要

目的  评价COLD-PCR-HRM 检测结直肠癌患者外周血KRAS 基因突变的临床应用价值。方法  将已知突变型 KRAS 组织DNA 与野生型DNA 做系列稀释,突变DNA 所占比例分别为50%、25%、10%、5%、3%、2% 和 1%。分别应 用常规PCR-HRM 法和COLD-PCR-HRM 法对不同比例KRAS 突变DNA 样本进行检测,验证两种检测方法的灵敏度;同 时应用 COLD-PCR-HRM 法对 62 例外周血和肿瘤组织配对样本进行一致性验证。结果  PCR-HRM 法最低检测浓度为 3%; COLD-PCR-HRM 法最低检测浓度为1%,两种方法的检测灵敏度均明显高于直接测序法(P < 0.05)。应用COLD-PCRHRM 法检测两种样本中KRAS 基因突变状态,其中血清样本中检测出13 例突变(突变率21.0%,13/62),组织中检测出 12 例突变(突变率 19.4%,12/62),两种标本同时存在突变的有 9 例,以组织中检测的 KRAS 状态为准,两者突变一致性 为 75.0%(9/12)。KRAS 基因突变在组织与外周血中存在一致性(κ=0.649;P < 0.001)。结论  COLD-PCR 结合 HRM 明 显提高了 KRAS 突变检测灵敏度,为其应用于低丰度突变样本检测提供了有利条件。

Abstract

Objective To evaluate the value of COLD-PCR-HRM in detecting KRAS gene mutations in peripheral blood of patients with colorectal carcinoma. Methods DNA from known mutation type was serially diluted into wild-type DNA to the following percentages: 50%, 25%, 10%, 5%, 3%, 2% and 1%. Tasting KRAS gene mutations in different proportions of DNA by conventional PCR-HRM and COLD-PCR-HRM to validate the sensitivity of two testing methods. At the same time, 62 cases of peripheral blood and tumor tissue matching samples were tested by COLD-PCR-HRM for consistency verification. Results The method of PCR-HRM minimum detectable concentration was 3%, and COLD-PCR-HRM was 1%, both methods were significantly higher than that of direct sequencing (P<0.05). KRAS mutations detection in two kinds of sample by COLD-PCR-HRM: 13 cases mutations in serum samples (mutation rate 21.0%, 13/62), 12 cases mutations in tumor tissue (mutation rate 19.4%, 12/62), 9 cases mutations in both two kinds of samples. Mutations in tumor tissue shall prevail, two mutations uniformity was 75.0% (9/12). There were consistency in KRAS mutations in tissue and peripheral blood (κ=0.649; P<0.001). Conclusions COLD-PCR-HRM significantly improved detection sensitivity of KRAS mutations, which provided favorable conditions for its application in low abundance mutation samples.

关键词

KRAS 基因突变 / COLD-PCR-HRM / 结直肠癌 / 外周血

Key words

KRAS gene mutation / COLD-PCR-HRM / Colorectal carcinoma / Peripheral blood

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李艳丽,赵冬梅,徐育红,张雁. COLD-PCR-HRM 检测结直肠癌患者外周血KRAS基因突变[J]. 肿瘤代谢与营养电子杂志. 2017, 4(1): 51
LI Yan-li, ZHAO Dong-mei, XU Yu-hong, ZHANG Yan. Detecting KRAS gene mutations in peripheral blood of colorectal carcinoma with COLD-PCR-HRM[J]. Electronic Journal of Metabolism and Nutrition of Cancer. 2017, 4(1): 51

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